I think you're right. I'm hoping that the JB weld will hold long enough to upgrade. I just don't fully understand the role of the louvers. Is there any harm in not having louvers on that side?
They close when it's cold to help the engine reach operating temp faster. It helps with efficiency, but not a critical operation. At least, that's how they work on my '74 International and my '21 GMC, I don't have my Bronco yet but assume that's what they do.
As for the hole in your intercooler, the JB weld was IMO a good short term solution. The intercooler is on the charged air side of the system, after the turbo, so it has positive pressure and would have been blowing air out of that hole under load. That would most likely keep the bulk of dirt out of the system (not all), but the loss of pressure would cause a distinct loss of engine power under load. I agree with others you should start looking at aftermarket upgrades vs. a stock replacement, but take your time to research it a little and find the right one.
7/14/20 Res, took delivery 4/7/22!!
A51 2 door Badlands, 2.7L, Sasquatch, Lux, MGV, MIC, Roof Rails, Tow